Publications

Adenaya A., Spriahailo D., Berger M., Noster J., Milke F., Schulz C., Reinthaler T., Poehlein A., Wurl O., Ribas-Ribas M., Hamprecht A., Brinkhoff T. 2024. Occurrence of antibiotic-resistant bacteria in the sea surface microlayer of coastal waters in the southern North Sea. Ecotoxicology and Environmental Safety 287:117259.

Zhao Z., Amano C., Reinthaler T., Baltar F., Orellana M.V., Herndl G.J. 2024. Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean. Nat Commun 15:6411

Zhao Z., Amano C., Reinthaler T., Orellana M.V., Herndl G.J. 2024. Substrate uptake patterns shape niche separation in marine prokaryotic microbiome. Sci. Adv. 10(20):eadn5143 doi:10.1126/sciadv.adn5143

Baltar F., Martínez-Pérez C., Amano C., Vial M., Robaina-Estévez S., Reinthaler T., Herndl G.J., Zhao Z., Logares R., Morales S.E., González J.M. 2023. A ubiquitous gammaproteobacterial clade dominates expression of sulfur oxidation genes across the mesopelagic ocean. Nat. Microbiol. doi:10.1038/s41564-023-01374-2

Herndl G.J., Bayer B., Baltar F., Reinthaler T. 2023. Prokaryotic Life in the Deep Ocean’s Water Column. Annu. Rev. Mar. Sci. 15(1) doi:10.1146/annurev-marine-032122-115655

Amano, C., Reinthaler T., Sintes E., Varela M. M., Stefanschitz J., Kaneko S., Nakano Y., Borchert W., Herndl G. J., Utsumi M. 2022. A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI). Limnol. Oceanogr.: Methods. doi: 10.10002/lom3.10528

Amano C., Zhao Z., Sintes E., Reinthaler T., Stefanschitz J., Kisadur M., Utsumi M., Herndl G.J. 2022. Limited carbon cycling due to high-pressure effects on the deep-sea microbiome. Nat. Geosci. doi:10.1038/s41561-022-01081-3.

Braun, A., Spona-Friedl, M., Avramov, M., Elsner, M., Baltar, F., Reinthaler, T., Herndl, G.J., Griebler, C. 2021. Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling. Biogeosci. 18:3689–3700.

Bayer, B., Pelikan, C., Bittner, M.J., Reinthaler, T., Könneke, Herndl, G.J., Offre, P. 2019. Proteomic response of three marine ammonia-oxidizing archaea towards hydrogen peroxide and their metabolic interactions with a heterotrophic alphaproteobacterium. mSystems, 4:203–215.

Bayer, B., Vojvoda, J., Reinthaler, T., Reyes, C., Pinto, M., Herndl, G.J. 2019. Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensins sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijsem.0.003360

Biller, S.J., Berube, P.M., Dooley, K., Williams, M., Satinsky, B.M., Hackl, T., Hogle, S.L., Coe, A., Bergauer, K., Bouman, H.A., Browning, T.J., De Corte, D., Hassler, C., Hulston, D., Jacquot, J.E., Maas, E.W., Reinthaler, T., Sintes, E., Yokokawa, T., Chisholm, S.W. 2018, ‘Marine microbial metagenomes sampled across space and time’ Scientific Data, vol 5, 180176. doi: 10.1038/sdata.2018.176

Berube, P.M., Biller, S.J., Hackl, T., Hogle, S.L., Satinsky, B.M., Becker, J.W., Braakman, R., Collins, S.B., Kelly, L., Berta-Thompson, J., Coe, A., Bergauer, K., Bouman, H.A., Browning, T.J., De Corte, D., Hassler, C., Hulata, Y., Jacquot, J.E., Maas, E.W., Reinthaler, T., Sintes, E., Yokokawa, T., Lindell, D., Stepanauskas, R., Chisholm, S.W. 2018, ‘Singe cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments’ Scientific Data, vol 5, 180154. doi: 10.1038/sdata.2018.154

Winter, C., Köstner, N., Kruspe, C.-P., Urban, D., Muck, S., Reinthaler, T., Herndl, G.J. 2018. Mixing alters the lytic activity of viruses in the dark ocean. Ecology 99, 700–713. doi:10.1002/ecy.2135.

Baltar, F., Lundin, D., Palovaara, J., Lekunberri, I., Reinthaler, T., Herndl, G. J., Pinhassi J. 2016. Prokaryotic responses to ammonium and organic carbon reveal alternative CO2 fixation pathways and importance of alkaline phosphatase in the mesopelagic North Atlantic. Front. Microbiol. 7, 788–19. doi:10.3389/fmicb.2016.01670.

Frank, A.H., Pontiller, B., Herndl, G.J., Reinthaler, T., 2016. Erythromycin and GC7 fail as domain-specific inhibitors for bacterial and archaeal activity in the open ocean. Aquat Microb Ecol 77 (2), 99–110.

Lønborg, C., Cuevas, L.A., Reinthaler, T., Herndl, G.J., Gasol, J.M., Morán, X.A.G., Bates N.R., Álvarez-Salgado, X. A. 2016. Depth dependent relationships between temperature and ocean heterotrophic prokaryotic production. Front. Mar. Sci. doi: 10.3389/fmars.2016.00090

Frank, A., Garcia, J.A., Herndl, G.J., Reinthaler, T. 2016. Connectivity between surface and deep waters determines prokaryotic diversity in the North Atlantic Deep Water. Environ. Microbiol. doi: 10.1111/1462-2920.13237

Reinthaler, T., X. A. Álvarez Salgado, M. Álvarez, H. M. van Aken, G. J. Herndl. 2013. Impact of water mass mixing on the biogeochemistry and microbiology of the Northeast Atlantic Deep Water. Global Biogeochem. Cycles doi: 10.1002/2013GB004634

Herndl, G.J., Reinthaler, T., 2013. Microbial control of the dark end of the biological pump. Nature Geoscience 6 (9), 718–724.

Baltar, F., Reinthaler, T., Herndl, G.J., Pinhassi, J. 2013. Major Effect of Hydrogen Peroxide on Bacterioplankton Metabolism in the Northeast Atlantic. Plos One 8 (4), doi:10.1371/journal.pone.0061051.

De Corte, D., Sintes, E., Yokokawa, T., Reinthaler, T., Herndl, G.J. 2012. Links between viruses and prokaryotes throughout the water column along a North Atlantic latitudinal transect. ISME Journal 6 (8), 1566–1577.

Swan, B.K., Martinez-Garcia, M., Preston, C.M., Sczyrba, A., Woyke, T., Lamy, D., Reinthaler, T., Poulton, N.J., Masland, E.D.P., Gomez, M.L., Sieracki, M.E., DeLong, E.F., Herndl, G.J., Stepanauskas, R. 2011. Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean. Science: 333, 1296–1300.

Varela, M.M., van Aken, H.M., Sintes, E., Reinthaler, T., Herndl, G.J. 2011. Contribution of Crenarchaeota and Bacteria to autotrophy in the North Atlantic interior. Environmental Microbiology: 13, 1524–1533.

De Corte, D., E. Sintes, C. Winter, T. Yokokawa, T. Reinthaler, G. J. Herndl. 2010. Links between viral and prokaryotic communities throughout the water column in the (sub)tropical Atlantic Ocean. ISME Journal: 4, 1431–1442.

Baltar, F., J. Aristegui, E. Sintes, J. M. Gasol, T. Reinthaler, G. J. Herndl. 2010. Significance of non-sinking particulate organic carbon and dark CO2 fixation to heterotrophic carbon demand in the mesopelagic northeast Atlantic. Geophysical Research Letters 37, doi:10.1029/2010GL043105.

Burd, A.B., D. A. Hansell, D. K. Steinberg, T. R. Anderson, J. ArÌstegui, F. Baltar, S. R. Beaupré, K. O. Buesseler, F. DeHairs, G. A. Jackson, D. C. Kadko, R. Koppelmann, R. S. Lampitt, T. Nagata, T. Reinthaler, C. Robinson, B. H. Robison, C. Tamburini, T. Tanaka. 2010. Assessing the apparent imbalance between geochemical and biochemical indicators of meso- and bathypelagic biological activity: What the @$#! is wrong with present calculations of carbon budgets? Deep Sea Res. II: 57:1557-1571.

Nagata, T., C. Tamburini, J. ArÌstegui, F. Baltar, A. B. Bochdansky, S. Fonda-Umani, H. Fukuda, A. Gogou, D. A. Hansell, R. L Hansman, G. J. Herndl, C. Panagiotopoulos, T. Reinthaler, R. Sohrin, P. Verdugo, N. Yamada, Y. Yamashita, T. Yokokawa, D. H. Bartlett. 2010. Emerging concepts on microbial processes in the bathypelagic ocean – ecology, biogeochemistry, and genomics. Deep Sea Res. II: 57:1519-1536.

Reinthaler, T., H. M van Aken, G. J. Herndl. 2010. Major contribution of autotrophy to microbial carbon cycling in the deep North Atlantic’s interior. Deep Sea Res. II:57:1572-1580.

Herndl G. J., H. Agogué, F. Baltar, T. Reinthaler, E. Sintes, and M. M. Varela. 2008. Regulation of aquatic microbial processes: the ‘microbial loop’ of the sunlit surface waters and the dark ocean dissected. Aquat. Microb. Ecol. 53: 59-68.

Gasol J. M., J. Pinhassi, L. Alonso-Sáez, H. Ducklow, G. J. Herndl, M. Koblížek, M. Labrenz, Y. Luo, X. A. G. Morán, T. Reinthaler, and M. Simon. 2008. Towards a better understanding of the microbial carbon flux in the sea. Aquat. Microb. Ecol. 53: 21-38.

Wängberg, S.-Å., K. I. M. Andreasson, K. Gustavson, T. Reinthaler and P. Hendriksen. 2008. UVB effects on microplankton communities in Kongsfjord, Svalbard – A mesocosm experiment. J. Exp. Mar. Biol. Ecol. 365: 156-163

Reinthaler, T., E. Sintes, and G. J. Herndl. 2008. Dissolved organic matter and bacterial production and respiration in the sea-surface microlayer of the open Atlantic and the western Mediterranean Sea. Limnol. Oceanogr. 53: 122-136.

Wilhartitz, I., Mach, R. L., Teira, E., Reinthaler, T., Herndl, G. J., and A. H. Farnleitner. 2007. Prokaryotic community analysis with CARD-FISH in comparison with FISH in ultra-oligotrophic ground- and drinking water. J. Appl. Microbiol. 103: 871-881

Reinthaler, T., K. Bakker, R. Manuels, J. Van Ooijen, and G. J. Herndl. 2006. Fully automated spectrophotometric approach to determine oxygen concentrations in seawater via continuous-flow analysis. Limnol. Oceanogr.: Methods 4: 358-366.

Reinthaler, T., H. van Aken, C. Veth, J. Arístegui, C. Robinson, P. J. le B. Williams, P. Lebaron, and G. J. Herndl. 2006. Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin. Limnol. Oceanogr. 51: 1262-1273.

Wängberg, S.-Å., K. I. M. Andreasson, K. Garde, K. Gustavson, P. Henriksen and T. Reinthaler. 2006. Inhibition of primary production by UV-B radiation in an Arctic bay – model calculations. Aquat. Sci. 68: 117-128.

Joux, F., H. Agogue, I. Obernosterer, C. Dupuy, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2006. Microbial community structure in the sea surface microlayer at two contrasting coastal sites in the northwestern Mediterranean Sea. Aqua. Microb. Ecol. 42:91-104.

Reinthaler, T., and G. J. Herndl. 2005. Seasonal dynamics of bacterial growth efficiencies in relation to phytoplankton in the southern North Sea. Aquat. Microb. Ecol. 39:7-16.

Reinthaler, T., C. Winter, and G. J. Herndl. 2005. Relationship between bacterioplankton richness, respiration, and production in the southern North Sea. Appl. Environ. Microbiol. 71:2260-2266.

Herndl, G. J., T. Reinthaler, E. Teira, H. van Aken, C. Veth, A. Pernthaler, and J. Pernthaler. 2005. Contribution of archaea to total prokaryotic production in the deep Atlantic ocean. Appl. Environ. Microbiol. 71:2303-2309.

Obernosterer, I., P. Catala, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2005. Enhanced heterotorophic activity in the surface microlayer of the Mediterranean Sea. Aquat. Microb. Ecol. 39:1616-1564.

Teira, E., T. Reinthaler, A. Pernthaler, J. Pernthaler, and G. J. Herndl. 2004. Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and archaea in the deep ocean. Appl. Environ. Microbiol. 70:4411-4414.

Agogué, H., E. O. Casamayor, F. Joux, I. Obernosterer, C. Dupuy, P. Catala, M. G. Weinbauer, T. Reinthaler, G. J. Herndl, and P. Lebaron. 2004. Comparison of samplers for the biological characterization of the sea surface microlayer. Limnol. Oceanogr.: Methods 2:213-225.