CSEARCH-Server: Accessing the CSEARCH spetrum estimation engine using WEB-Technology
Vladimir Purtuc, Veronika Schütz, Susanne Felsinger and Wolfgang
Robien
You are visitor:
What you send: Structure as MOLfile

What you get: C-13 NMR spectrum prediction

This service is free of charge
How to access the CSEARCH-Server:
The first step is the validation of your
email-address in order to be allowed to access this service !
Send a request to Wolfgang.Robien@univie.ac.at
giving your name, address, phone- and fax-number together with a short
description of your research field
For personal communication use: Wolfgang.Robien@univie.ac.at
Email-address of the server (send ONLY
MOLfiles) is: wr@alpha.univie.ac.at
-
Draw your structure
using ISISDRAW or any other structure drawing software able to export MOLfiles
-
Export the structure
as MOLfile
-
Prepare an email to "wr@alpha.univie.ac.at"
holding exactly ONE MOLfile; the MOLfile can be either send as Mail-body
or as "text-attachment"
-
In any case the MOLfile must be plain text;
don't use base64-encoding or uuencode.
-
Optionally select a keyword and/or sample identifier
| Keyword in subject field |
Technology used |
Stereochemistry |
| hose2d (default) |
HOSE-code |
ignored |
| hose3d |
HOSE-code |
used |
| nnet2d |
Neural network |
ignored |
| nnet3d |
Neural network |
used |
Project-management and sample-management:
In order to support project- and sample-management any additional
information can be entered into the subject-field behind
the required processing method. This text will be used as subject
for the reply.
Examples:
Your subject-line might look as below:
| Subject: nnet3d Project: Health-care / Sample-#4810 |
| Subject: hose2d; sample: Not Fiagra / Stereoisomer-#1 / Project: High
Life |
Interpretation of the result page
You will receive two emails; the first
one will hold an ASCII-protocol of the spectrum estimation procedure,
the second one will contain a Postscript-file showing the usual
CSEARCH-datasheet as given above.
-
Solvents used: All HOSE-code
calculations are performed using all solvents
available with the reference data collection; all neural
network calculations are done for CDCl3
-
Stereochemistry: The parameter
ON/OFF
in the headerline shows the utilization
of stereochemical information
-
Database: 75,000 C-13 NMR spectra
-
Shifttable: The shifttable on
the right-hand side gives you the following information
One line within the shifttable consists of
the following information:
C-aa: bbb.b M
c Min Max Hits
| aa |
Number of carbon |
| bbb.b |
Predicted chemical shiftvalue |
| M |
Signal multiplicity |
| c |
Bond level used for calculation (only for HOSE-code) |
| Min |
Lowest expected shiftvalue |
| Max |
Highest expected shiftvalue |
| Hits |
Number of hits contributing to this result |
Important hints:
-
Use stereochemical information whenever it is possible
- stereochemistry is entered by using up/down-bonds on each stereocenter
-
sp3-carbons
should be handled at least at the 3-bond level to give reliable
results
-
sp2- and sp-carbons
should be handled at least at the 4-bond level to give reliable
results
-
The number of hits should be at least 3
-
Preview your Postscript file always with an appropriate
previewer which supports colors and/or print the Postscript-file on a color-printer;
any information which is in doubt will be given in red
color and additionally marked
by greyscale-printing. This is a serious warning automatically done by
the CSEARCH-software in order to give you some additional information about
the reliability of the predicted spectra.
-
Always use HOSE-code and neural network technology
and compare the results.
-
When doing more than 10 spectrum estimations it would
be nice to use a delay of 5 minutes between the requests in order to allow
other people to do a single calculation in between - the server-procedure
is running with a repetition rate of 4 minutes in order to avoid any system
overload.
All requests will be stored (structure, resulting peaktable, email-address
of user, date and time of access), but will be kept confidential
Keywords: Nuclear Magnetic Resonance Database NMR spectrum
estimation calculation prediction neural network artificial carbon-NMR
structure elucidation one-dimensional two-dimensional spectroscopy HOSE-code
WEB-technology interepretation CSEARCH software databank
Last update: 06-Oct-2000
(Wolfgang Robien)