Bioinformatics World

A collection of evaluated bioinformatics programs and databases
created by Herbert Mayer

last modified Oct 11 2006 at 12:38
last complete check for broken links: August 22, 2006
page visits since June 1, 2001:                                                
Page visits
Most bioinformatics linkpages available on the WWW are lists of programs and databases divided in categories. And that is the point. It is just lists, but not descriptions. The purpose of BIOINFORMATICS WORLD is to provide a knowledge database rather than a linkpage. Programs and tools are categorized, described, evaluated, and compared, allowing the user to choose the site which fits best his/her needs. BIOINFORMATICS WORLD is intended to help you steer through the jungle of web-based bioinformatics sites.
There are two main sections: the Main Index where all resources are categorized and described in table form, and the FAQ Center, which provides step-by-step descriptions how to solve specific problems using bioinformatics tools and databases. The page A-Z lists all resources in alphabetical order. Finally, the Site Journal keeps you informed about latest additions and news.

      BMT            MUW           Dep. of Vascular Biology           MSI    

Navigate   NAVIGATE Bioinformatics World   Navigate
A to Z   Alphabetical List  
"I know the name of a bioinformatics resource and I want to check where it is described within the Bioinformatics World - Main Index."                  
1-9 | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z
Search this Site   Search this Site  
I want to search all of the Bioinformatics World pages (Main Index and FAQ Center) using any keyword."

For this purpose, you can use the "site-specific" search functions of Yahoo or Google
! Simply replace the example "VISTA" with the term(s) you are looking for. Please note the differences between the 2 search engines, described in FAQ INFO1 !
Yahoo! Advanced Search            
Advanced Search

Site Journal   Site Journal   "What's new on Bioinformatics World ?"

FAQ Index   FAQ Index  "I have a question related to a specific topic."

Main Index   Main Index   "I want to browse all resources related to a specific topic."
TOP Sites TOP SITES   Top Bioinformatics Institutes   Top Link Collections   Top Documentations   Top Education       
Data Integration DATA INTEGRATION   Data Super-Integration   Gene-centered Data Integration   Gene Regulation-centered Data Integration  Protein-centered Data Integration  Disease-centered Data Integration   High-Throughput Data Retrieval   Sequence Tool Collections                   
Literature LITERATURE   Literature Browsers   Journal Browsers   Patent Databases   Biological Text Analysis   Bioinformatics Journals       

Sequence Retrieval SEQUENCE RETRIEVAL   Sequence Retrieval Resources   General Sequence Databases   ID Guide                            
Sequence Similarity SEQUENCE SIMILARITY   General Database Search   Special Database Search   Pairwise Alignment   Multiple Alignment   Sequence Logos    
Nucleic Acids DNA   DNA Linkpages   DNA Properties   Primers and In silico PCR   Restriction Sites   Translation 
Nucleic Acids RNA   RNA Linkpages   RNA Structure   RNA Processing   UTRs   Non-coding RNA 

Gene Analysis GENES   Genes Linkpages   Gene Prediction   S/MAR Prediction   Promoter Prediction   Promoter Extraction   Regulatory Sequence Analysis Workbenches   Transcription Factor and Motif Databases   TF Module Databases   Regulatory Unit Databases   TFBS Matching   Motif Matching   TF Module Matching   Selected TF-Target Databases   TFBS Discovery   Motif Discovery   TF Module Discovery   Motif Design   Repetitive Elements
Genomics GENOMICS   Genomics Linkpages   Comparative Genomics   Phylogenetics   Taxonomy   Genomic Mapping, Cytogenetics   SNPs, Mutations, Disease   Cancer   
Human Genome THE HUMAN GENOME   Human Genome Databases   Human Genome Documentation    
Other Genomes OTHER GENOMES   Multi-Species Portals   Single Species
Expression EXPRESSION   Expression Linkpages   Microarray Data Analysis   Microarray Data Repositories   Selected Microarray Datasets   Selected Microarray Platforms   SAGE   ESTs, Splicing, Polyadenylation   RNA Localization Databases    
Proteins PROTEINS   Proteins Linkpages   Primary Structure   Secondary Structure   Domains, Families   Motifs 1 - Integrated Search   Motifs 2 - Motif Discovery   Motifs 3 - Modification  Motifs 4 - Localization   Protein Localization Databases                    
3D Structures 3D STRUCTURES   Structures Linkpages   Structure Databases   Structure Alignment   Visualization Software   3D Prediction 
Proteins PROTEOMICS   Protein Identification   Selected Proteomics Datasets  

Pathways PATHWAYS, INTERACTIONS, FUNCTIONS   Pathways and Interactions Databases   Selected Pathways   Enzymes   GO Portals   GO Browsers   GO Annotators   GO Data Mining   Integrated Functional Data Mining                                   
Pathways CHEMINFORMATICS   Cheminformatics Linkpages   Small Molecules Databases       
Graphical Tools GRAPHICAL TOOLS   Graphical Bioinformatics Programs 
Various Tools VARIOUS TOOLS   Sequence Manipulation   Sequence Format Conversion   Sequence Randomization   Code Tables   
Bioinformatics BIOINFORMATICS DEVELOPMENT   Bioinformatics Programming   Bioinformatics Forums  

Appendix   Appendix  "Things that do not fit anywhere else." 
Informatics Informatics    Programming    Webdesign    Websearch            
General Freeware General Freeware   Download Portals   Browsers and E-mail   File Zipping and Transfer   Download Utilities   Image Manipulation   Office Programs   Security   System Tools   Miscellaneous  
General Freeware Cool Stuff   Encyclopedias   Globes and Maps  

Herbert Mayer   Personal Section    "The man behind Bioinformatics World"   
Personal Informations Personal Records   Contact   What others say   Personal Publications   Personal Database Submissions    

Bioinformatics World was developed by Herbert Mayer, Medical University of Vienna, Austria (2001-2006)